Open Software
Brain Dynamics Toolbox (2016-2018) An open-source toolbox for simulating dynamical systems in neuroscience.Argtable (1998-2011) An open-source ANSI C library for parsing command-line arguments.
Books
Heitmann S, Breakspear M (2017, 2018a, 2018b) Handbook for the Brain Dynamics Toolbox. QIMR Berghofer Medical Research Institute. 1st Edition: Version 2017c. ISBN 978-1-5497-2070-3. 2nd Edition: Version 2018a. ISBN 9781-9805-7250-3. 3rd Edition: Version 2018a. ISBN 9781-7287-8188-4.
Book Chapters
Park Y, Heitmann S, Ermentrout GB (2017) The utility of phase models in studying neuronal synchronization. In Computational Models of Brain and Behavior. Ed Ahmed A Moustafa. 493-504. John Wiley & Sons.
Papers
- Heitmann S, Breakspear M (2018) Putting the dynamic back into dynamic functional connectivity. Network Neuroscience. Vol O. Issue ja. p1-61.
- Heitmann S, Aburn M, Breakspear M (2017) The Brain Dynamics Toolbox for Matlab.
- Heitmann S, Rule M, Truccolo W, Ermentrout B (2017) Optogenetic stimulation shifts the excitability of cerebral cortex from type I to type II: Oscillation onset and wave propagation. PLOS Computational Biology. 13(1): e1005349. doi:10.1371/journals.pcbi.1005349.
- Pearson J, Chiou R, Rogers S, Wicken M, Heitmann S, Ermentrout GB (2016) Sensory dynamics of visual hallucinations in the normal population. eLife Vol 5. e17072.
- Heitmann S, Ermentrout GB (2016) Propagating waves as a cortical mechanism of direction-selectivity in V1 motion cells. Proceedings of the 1st International Workshop on Computational Models of Visual Cortex. ACM. doi:10.4108/eai.3-12-2015.2262423.
- Heitmann S, Boonstra T, Gong P, Breakspear M, Ermentrout GB (2015) The rhythms of steady posture: Motor commands as spatially organized oscillation patterns. Neurocomputing: Special Issue on Advances in Biological Rhythmic Pattern Generation. Vol 170. p1-13. (preprint)
- Heitmann S, Ermentrout GB (2015) Synchrony, waves and ripple in spatially coupled Kuramoto oscillators with Mexican hat connectivity. Biological Cybernetics 109:3. (preprint)
- Heitmann S, Boonstra T, Breakspear M (2013) A dendritic mechanism for decoding traveling waves: Principles and applications to motor cortex. PLOS Computational Biology 9(10): e1003260.
- Heitmann S, Gong P, Breakspear M (2012) A computational role for bistability and traveling waves in motor cortex. Frontiers in Computational Neuroscience 6:67.
- Heitmann S, Ferns N, Breakspear M (2012). Muscle co-contraction modulates damping and joint stability in a three-link biomechanical limb. Frontiers in Neurorobotics 5:5.
- Breakspear
M, Heitmann S, Daffertshofer A (2010). Generative models of cortical oscillations: Neurobiological implications of the Kuramoto model. Frontiers in Human Neuroscience 4:190.
- Wilson LS, Gill RW, Sharp IF, Joseph J, Heitmann SA, Chen CF, Dadd MJ, Kajan A, Colings AF, Gunaratnam M (2000) Building the hospital without walls - a CSIRO home telecare initiative. Telemedicine Journal 6(2).
- Wilson L, Sharp I, Gill R, Heitmann S, Chen F, Dadd M, Kajan A, Gunaratnam M, Tam E (1999) The hospital without walls: Home telecare using vital signs monitoring. HIC-99: Proceedings, 363-368
Talks
- NeuroEng 2018: 11th Australasian Workshop on Neuro-Engineering and Computational Neuroscience. Sydney, Australia. Brain Dynamics Toolbox for Matlab.
- NeuroEng 2016: 9th Australasian Workshop on Neuro-Engineering and Computational Neuroscience. Brisbane, Australia. Optogenetic Stimulation shifts the Excitability of Cortex from Type I to Type II.
- ICMNS 2016: 2nd International Conference on Mathematical Neuroscience. Antibes Juan les Pins, France. Illusory Motion of Geometric Hallucinations Induced by Visual Flicker.
- BICT 2015: 1st International Workshop on Computational Models of Visual Cortex. New York, USA. Propagating Waves as a Cortical Mechanism of Direction-Selectivity in V1 Motion Cells.
- IPCog 2013: Workshop on Information Processing in Cognition. CSIRO, Sydney, Australia. Transforming Cortical Wave Patterns into Motor Movement.
- Brain Modes 2012: Large-scale models of the Brain. QMIR, Brisbane, Australia. Decoding Travelling Waves in Cortex by Dendritic Computation.
- CompCPS 2011: The Second Australian Workshop on Computation in Cyber-Physical Systems. CSIRO, Sydney, Australia. Spatial Phase-of-Firing Patterns as a Cortical Encoding Scheme.
PhD Thesis
Heitmann S (2013) Principles of encoding motor commands in travelling waves of neuronal oscillations. PhD Thesis. University of New South Wales.Technical reports
Brain Resource Company- Heitmann S. Psychometric Test Library User Requirements Specification (URS PMTL 1 to 20); Validation Plan (VP PMTL); 2007.
- Heitmann S. IntegNeuro Software Client User Requirements Specification (URS INSC); Functional Spec. (FS INSC); Validation Plan (VP INSC); 2007.
- Heitmann S. Wave Scoring System User Requirements Specification (URS WAV); Wave Scoring User Guide (OI 20.01.1); Validation Plan (VP WAV); 2007.
- Heitmann S. Psychometric Pipeline User Requirements Specification (URS PMPIP); Function Specification (FS PMPIP); 2007.
- Heitmann S. Upload Server User Requirements Specification (URS US); Functional Specification (FS US); 2006.
- Heitmann S. Logistics Server User Requirements Specification (URS LS); 2006.
- Heitmann S. RCS Prototype XTerminal SVD, Technical Report 04210054, 2005.
- Heitmann S. RCS Prototype XTerminal Installation Guide, 04210055, 2005.
- Heitmann S. SXC Software Installation Guide, Technical Report 04216043, 2005.
- Heitmann S. SXC Linux Build Instructions, Technical Report, 2005.
- Heitmann S. Michigan Software Architecture, Technical Specification, 2003.
- Heitmann S, Reilly A. Michigan ARMDSP Device Driver Specification, 2003.
- Heitmann S. Overview of Michigan Architecture, Functional Specification, 2002.
- Heitmann S. iO Frontpanel: ARMAVR Firmware Interface, Technical Specification, 2001.
- Heitmann S. iO Frontpanel: AVR Firmware Internals, Technical Specification, 2001.
- Heitmann S. Huron ADAT IO Card Overview, Functional Specification, 2000.
- Heitmann S. Huron WavePlayer2 Functional Specification, 2000.
- Heitmann S. Bill Calculator Installation Guide & Release Notes, Tech Rep, 2000.
- Heitmann S. Bill Calculator Functionality Tests, Technical Report, 2000.
- Heitmann S. Bill Calculator Design Specification, Technical Specification, 2000.
- Heitmann S. IBiS (Intertouch Billing System) Design Specification, 2000.
- Heitmann S. HWW Database API, CSIRO Telecommunications & Industrial Physics, Software Library Manual, 1999.
- Heitmann S. Introduction to PixBlock1.2, CSIRO Telecommunications & Industrial Physics, Software Library Manual, 1999.
- Heitmann S, Talbot H. Introduction to LIAR wrapper functions, CSIRO Mathematical & Information Sciences, Technical Report CMIS98/77, 1998.